Read quality#
In this notebook, we link to the quality reports from MultiQC, index read QC and per sample from FastQC and FastP.
MultiQC
MultiQC is a tool which integrates information from various tools in the workflow (Currently, it is not quite configured correctly)
Index read QC
Index reads with average quality score below 30 for a given run may be unreliable and cause demultiplexing errors.
Sample read QC
Siaya_Delta_Dead_01 fastp report
Siaya_Delta_Dead_02 fastp report
Siaya_Delta_Dead_03 fastp report
Siaya_Delta_Dead_04 fastp report
Siaya_Delta_Dead_05 fastp report
Siaya_Delta_Dead_06 fastp report
Siaya_Delta_Dead_07 fastp report
Siaya_Delta_Dead_08 fastp report
Siaya_Delta_Dead_09 fastp report
Siaya_Delta_Dead_10 fastp report
Siaya_Delta_Dead_11 fastp report
Siaya_Delta_Dead_12 fastp report
Siaya_Delta_Dead_13 fastp report
Siaya_Delta_Dead_14 fastp report
Siaya_Delta_Dead_15 fastp report
Siaya_Delta_Dead_16 fastp report
Siaya_Delta_Dead_17 fastp report
Siaya_Delta_Dead_18 fastp report
Siaya_Delta_Dead_19 fastp report
Siaya_Delta_Dead_20 fastp report
Siaya_Delta_Dead_21 fastp report
Siaya_Delta_Dead_22 fastp report
Siaya_Delta_Dead_23 fastp report
Siaya_Delta_Dead_24 fastp report
Siaya_Delta_Dead_25 fastp report
Siaya_Delta_Dead_26 fastp report
Siaya_Delta_Dead_27 fastp report
Siaya_Delta_Dead_28 fastp report
Siaya_Delta_Dead_29 fastp report
Siaya_Delta_Dead_30 fastp report
Siaya_Delta_Dead_31 fastp report
Siaya_Delta_Dead_32 fastp report
Siaya_Delta_Dead_33 fastp report
Siaya_Delta_Dead_34 fastp report
Siaya_Delta_Dead_35 fastp report
Siaya_Delta_Dead_36 fastp report
Siaya_Delta_Dead_37 fastp report
Siaya_Delta_Dead_38 fastp report
Siaya_Delta_Dead_39 fastp report
Siaya_Delta_Dead_40 fastp report
Siaya_Delta_Dead_41 fastp report
Siaya_Delta_Dead_42 fastp report
Siaya_Delta_Dead_43 fastp report
Siaya_Delta_Dead_44 fastp report
Siaya_Delta_Dead_45 fastp report
Siaya_Delta_Dead_46 fastp report
Siaya_Delta_Dead_47 fastp report
Siaya_Delta_Dead_48 fastp report
Siaya_Delta_Dead_49 fastp report
Siaya_Delta_Dead_50 fastp report
Siaya_Delta_Dead_51 fastp report
Siaya_Delta_Dead_52 fastp report
Siaya_Delta_Dead_53 fastp report
Siaya_Delta_Dead_54 fastp report
Siaya_Delta_Dead_55 fastp report
Siaya_Delta_Dead_56 fastp report
Siaya_Delta_Dead_57 fastp report
Siaya_Delta_Dead_58 fastp report
Siaya_Delta_Dead_59 fastp report
Siaya_Delta_Dead_60 fastp report
Siaya_Delta_Dead_61 fastp report
Siaya_Delta_Dead_62 fastp report
Siaya_Delta_Dead_63 fastp report
Siaya_Delta_Dead_64 fastp report
Siaya_Delta_Dead_65 fastp report
Siaya_Delta_Dead_66 fastp report
Siaya_Delta_Dead_67 fastp report
Siaya_Delta_Dead_68 fastp report
Siaya_Delta_Dead_69 fastp report
Siaya_Delta_Dead_70 fastp report
Siaya_Delta_Dead_71 fastp report
Siaya_Delta_Dead_72 fastp report
Siaya_Delta_Dead_73 fastp report
Siaya_Delta_Dead_74 fastp report
Siaya_Delta_Dead_75 fastp report
Siaya_Delta_Dead_76 fastp report
Siaya_Delta_Dead_77 fastp report
Siaya_Delta_Dead_78 fastp report
Siaya_Delta_Dead_79 fastp report
Siaya_Delta_Dead_80 fastp report
Siaya_Delta_Dead_81 fastp report
Siaya_Delta_Dead_82 fastp report
Siaya_Delta_Dead_83 fastp report
Siaya_Delta_Dead_84 fastp report
Siaya_Delta_Dead_85 fastp report
Siaya_Delta_Dead_86 fastp report
Siaya_Delta_Dead_87 fastp report
Siaya_Delta_Dead_88 fastp report
Siaya_Delta_Dead_89 fastp report
Siaya_Delta_Dead_90 fastp report
Siaya_Delta_Dead_91 fastp report
Siaya_Delta_Dead_92 fastp report
Siaya_Delta_Dead_93 fastp report
Siaya_Delta_Dead_94 fastp report
Siaya_Delta_Dead_95 fastp report
Siaya_Delta_Dead_Negative fastp report
Siaya_Delta_Alive_01 fastp report
Siaya_Delta_Alive_02 fastp report
Siaya_Delta_Alive_03 fastp report
Siaya_Delta_Alive_04 fastp report
Siaya_Delta_Alive_05 fastp report
Siaya_Delta_Alive_06 fastp report
Siaya_Delta_Alive_07 fastp report
Siaya_Delta_Alive_08 fastp report
Siaya_Delta_Alive_09 fastp report
Siaya_Delta_Alive_10 fastp report
Siaya_Delta_Alive_11 fastp report
Siaya_Delta_Alive_12 fastp report
Siaya_Delta_Alive_13 fastp report
Siaya_Delta_Alive_14 fastp report
Siaya_Delta_Alive_15 fastp report
Siaya_Delta_Alive_16 fastp report
Siaya_Delta_Alive_17 fastp report
Siaya_Delta_Alive_18 fastp report
Siaya_Delta_Alive_19 fastp report
Siaya_Delta_Alive_20 fastp report
Siaya_Delta_Alive_21 fastp report
Siaya_Delta_Alive_22 fastp report
Siaya_Delta_Alive_23 fastp report
Siaya_Delta_Alive_24 fastp report
Siaya_Delta_Alive_25 fastp report
Siaya_Delta_Alive_26 fastp report
Siaya_Delta_Alive_27 fastp report
Siaya_Delta_Alive_28 fastp report
Siaya_Delta_Alive_29 fastp report
Siaya_Delta_Alive_30 fastp report
Siaya_Delta_Alive_31 fastp report
Siaya_Delta_Alive_32 fastp report
Siaya_Delta_Alive_33 fastp report
Siaya_Delta_Alive_34 fastp report
Siaya_Delta_Alive_35 fastp report
Siaya_Delta_Alive_36 fastp report
Siaya_Delta_Alive_37 fastp report
Siaya_Delta_Alive_38 fastp report
Siaya_Delta_Alive_39 fastp report
Siaya_Delta_Alive_40 fastp report
Siaya_Delta_Alive_41 fastp report
Siaya_Delta_Alive_42 fastp report
Siaya_Delta_Alive_43 fastp report
Siaya_Delta_Alive_44 fastp report
Siaya_Delta_Alive_45 fastp report
Siaya_Delta_Alive_46 fastp report
Siaya_Delta_Alive_47 fastp report
Siaya_Delta_Alive_48 fastp report
Siaya_Delta_Alive_49 fastp report
Siaya_Delta_Alive_50 fastp report
Siaya_Delta_Alive_51 fastp report
Siaya_Delta_Alive_52 fastp report
Siaya_Delta_Alive_53 fastp report
Siaya_Delta_Alive_54 fastp report
Siaya_Delta_Alive_55 fastp report
Siaya_Delta_Alive_56 fastp report
Siaya_Delta_Alive_57 fastp report
Siaya_Delta_Alive_58 fastp report
Siaya_Delta_Alive_59 fastp report
Siaya_Delta_Alive_60 fastp report
Siaya_Delta_Alive_61 fastp report
Siaya_Delta_Alive_62 fastp report
Siaya_Delta_Alive_63 fastp report
Siaya_Delta_Alive_64 fastp report
Siaya_Delta_Alive_65 fastp report
Siaya_Delta_Alive_66 fastp report
Siaya_Delta_Alive_67 fastp report
Siaya_Delta_Alive_68 fastp report
Siaya_Delta_Alive_69 fastp report
Siaya_Delta_Alive_70 fastp report
Siaya_Delta_Alive_71 fastp report
Siaya_Delta_Alive_72 fastp report
Siaya_Delta_Alive_73 fastp report
Siaya_Delta_Alive_74 fastp report
Siaya_Delta_Alive_75 fastp report
Siaya_Delta_Alive_76 fastp report
Siaya_Delta_Alive_77 fastp report
Siaya_Delta_Alive_78 fastp report
Siaya_Delta_Alive_79 fastp report
Siaya_Delta_Alive_80 fastp report
Siaya_Delta_Alive_81 fastp report
Siaya_Delta_Alive_82 fastp report
Siaya_Delta_Alive_83 fastp report
Siaya_Delta_Alive_84 fastp report
Siaya_Delta_Alive_85 fastp report
Siaya_Delta_Alive_86 fastp report
Siaya_Delta_Alive_87 fastp report
Siaya_Delta_Alive_88 fastp report
Siaya_Delta_Alive_89 fastp report
Siaya_Delta_Alive_90 fastp report
Siaya_Delta_Alive_91 fastp report
Siaya_Delta_Alive_92 fastp report
Siaya_Delta_Alive_93 fastp report
Siaya_Delta_Alive_94 fastp report
Siaya_Delta_Alive_95 fastp report
Siaya_Delta_Alive_Negative fastp report
Siaya_Delta_Dead_96 fastp report
Siaya_Delta_Dead_97 fastp report
Siaya_Delta_Dead_98 fastp report
Siaya_Delta_Dead_99 fastp report
Siaya_Delta_Dead_100 fastp report
Siaya_Delta_Alive_96 fastp report
Siaya_Delta_Alive_97 fastp report
Siaya_Delta_Alive_98 fastp report
Siaya_Delta_Alive_99 fastp report
Siaya_Delta_Dead_101 fastp report
Siaya_Delta_Dead_102 fastp report
Siaya_Delta_Dead_103 fastp report
Siaya_Delta_Dead_104 fastp report
Siaya_Delta_Dead_105 fastp report
Siaya_Delta_Alive_100 fastp report
Siaya_Delta_Alive_101 fastp report
Siaya_Delta_Alive_102 fastp report
Siaya_Delta_Alive_103 fastp report
Siaya_Delta_Dead_106 fastp report
Siaya_Delta_Dead_107 fastp report
Siaya_Delta_Dead_108 fastp report
Siaya_Delta_Dead_109 fastp report
Siaya_Delta_Dead_110 fastp report
Siaya_Delta_Alive_104 fastp report
Siaya_Delta_Alive_105 fastp report
Siaya_Delta_Alive_106 fastp report
Siaya_Delta_Alive_107 fastp report
Siaya_Delta_Dead_111 fastp report
Siaya_Delta_Dead_112 fastp report
Siaya_Delta_Dead_113 fastp report
Siaya_Delta_Dead_114 fastp report
Siaya_Delta_Dead_115 fastp report
Siaya_Delta_Alive_108 fastp report
Siaya_Delta_Alive_109 fastp report
Siaya_Delta_Alive_110 fastp report
Siaya_Delta_Alive_111 fastp report
Siaya_Delta_Dead_116 fastp report
Siaya_Delta_Dead_117 fastp report
Siaya_Delta_Dead_118 fastp report
Siaya_Delta_Dead_119 fastp report
Siaya_Delta_Alive_112 fastp report
Siaya_Delta_Alive_113 fastp report
Siaya_Delta_Alive_114 fastp report
Siaya_Delta_Alive_115 fastp report
Siaya_Delta_Alive_116 fastp report
Siaya_Delta_Dead_120 fastp report
Siaya_Delta_Dead_121 fastp report
Siaya_Delta_Dead_122 fastp report
Siaya_Delta_Dead_123 fastp report
Siaya_Delta_Alive_117 fastp report
Siaya_Delta_Alive_118 fastp report
Siaya_Delta_Alive_119 fastp report
Siaya_Delta_Alive_120 fastp report
Siaya_Delta_Alive_121 fastp report
Siaya_Delta_Dead_124 fastp report
Siaya_Delta_Dead_125 fastp report
Siaya_Delta_Dead_126 fastp report
Siaya_Delta_Dead_127 fastp report
Siaya_Delta_Alive_122 fastp report
Siaya_Delta_Alive_123 fastp report
Siaya_Delta_Alive_124 fastp report
Siaya_Delta_Alive_125 fastp report
Siaya_Delta_Alive_126 fastp report
Siaya_Delta_Dead_128 fastp report
Siaya_Delta_Dead_129 fastp report
Siaya_Delta_Dead_130 fastp report
Siaya_Delta_Dead_131 fastp report
Siaya_Delta_Alive_127 fastp report
Siaya_Delta_Alive_128 fastp report
Siaya_Delta_Alive_129 fastp report