{"cells": [{"cell_type": "code", "execution_count": 1, "id": "c62bfdd6", "metadata": {"execution": {"iopub.execute_input": "2024-11-07T14:10:02.917849Z", "iopub.status.busy": "2024-11-07T14:10:02.917503Z", "iopub.status.idle": "2024-11-07T14:10:03.235921Z", "shell.execute_reply": "2024-11-07T14:10:03.234948Z"}, "papermill": {"duration": 0.325252, "end_time": "2024-11-07T14:10:03.238052", "exception": false, "start_time": "2024-11-07T14:10:02.912800", "status": "completed"}, "tags": ["remove-input"]}, "outputs": [], "source": ["import pandas as pd"]}, {"cell_type": "code", "execution_count": 2, "id": "bd233605", "metadata": {"execution": {"iopub.execute_input": "2024-11-07T14:10:03.244531Z", "iopub.status.busy": "2024-11-07T14:10:03.244188Z", "iopub.status.idle": "2024-11-07T14:10:03.248812Z", "shell.execute_reply": "2024-11-07T14:10:03.248012Z"}, "papermill": {"duration": 0.008777, "end_time": "2024-11-07T14:10:03.250010", "exception": false, "start_time": "2024-11-07T14:10:03.241233", "status": "completed"}, "tags": ["parameters", "remove-input"]}, "outputs": [], "source": ["metadata_path = '../../config/metadata.tsv'\n", "index_read_qc = True\n", "wkdir = \"\""]}, {"cell_type": "code", "execution_count": 3, "id": "35e5a883", "metadata": {"execution": {"iopub.execute_input": "2024-11-07T14:10:03.255081Z", "iopub.status.busy": "2024-11-07T14:10:03.254894Z", "iopub.status.idle": "2024-11-07T14:10:03.259065Z", "shell.execute_reply": "2024-11-07T14:10:03.258355Z"}, "papermill": {"duration": 0.008253, "end_time": "2024-11-07T14:10:03.260302", "exception": false, "start_time": "2024-11-07T14:10:03.252049", "status": "completed"}, "tags": ["remove-input"]}, "outputs": [], "source": ["# Parameters\n", "metadata_path = \"config/metadata_ms.tsv\"\n", "index_read_qc = True\n", "wkdir = \"/home/snagi/lstm_projects/ampseq-agvampir002\"\n"]}, {"cell_type": "markdown", "id": "99536340", "metadata": {"papermill": {"duration": 0.001883, "end_time": "2024-11-07T14:10:03.264142", "exception": false, "start_time": "2024-11-07T14:10:03.262259", "status": "completed"}, "tags": []}, "source": ["### Read quality\n", "\n", "In this notebook, we link to the quality reports from MultiQC, index read QC and per sample from FastQC and FastP.   "]}, {"cell_type": "code", "execution_count": 4, "id": "7245f3b2", "metadata": {"execution": {"iopub.execute_input": "2024-11-07T14:10:03.268793Z", "iopub.status.busy": "2024-11-07T14:10:03.268610Z", "iopub.status.idle": "2024-11-07T14:10:03.283755Z", "shell.execute_reply": "2024-11-07T14:10:03.283032Z"}, "papermill": {"duration": 0.019158, "end_time": "2024-11-07T14:10:03.285088", "exception": false, "start_time": "2024-11-07T14:10:03.265930", "status": "completed"}, "tags": ["remove-input"]}, "outputs": [{"data": {"text/markdown": ["## MultiQC"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["MultiQC is a tool which integrates information from various tools in the workflow (Currently, it is not quite configured correctly)"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/multiqc/multiqc_report.html>MultiQC report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}], "source": ["if metadata_path.endswith('.xlsx'):\n", "\tmetadata = pd.read_excel(metadata_path, engine='openpyxl')\n", "elif metadata_path.endswith('.tsv'):\n", "\tmetadata = pd.read_csv(metadata_path, sep=\"\\t\")\n", "elif metadata_path.endswith('.csv'):\n", "\tmetadata = pd.read_csv(metadata_path, sep=\",\")\n", "else:\n", "\traise ValueError(\"Metadata file must be .xlsx or .csv\")\n", "\n", "from IPython.display import display, Markdown\n", "display(Markdown('## MultiQC'))\n", "display(Markdown('MultiQC is a tool which integrates information from various tools in the workflow (Currently, it is not quite configured correctly)'))\n", "display(Markdown(f'<a href={wkdir}/results/qc/multiqc/multiqc_report.html>MultiQC report</a>'))"]}, {"cell_type": "code", "execution_count": 5, "id": "35502574", "metadata": {"execution": {"iopub.execute_input": "2024-11-07T14:10:03.290870Z", "iopub.status.busy": "2024-11-07T14:10:03.290692Z", "iopub.status.idle": "2024-11-07T14:10:03.299043Z", "shell.execute_reply": "2024-11-07T14:10:03.298330Z"}, "papermill": {"duration": 0.012703, "end_time": "2024-11-07T14:10:03.300242", "exception": false, "start_time": "2024-11-07T14:10:03.287539", "status": "completed"}, "tags": ["remove-input"]}, "outputs": [{"data": {"text/markdown": ["## Index read QC"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["Index reads with average quality score below 30 for a given run may be unreliable and cause demultiplexing errors."], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/index-read-qc/I1.html>Index 1 FASTQC report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/index-read-qc/I2.html>Index 2 FASTQC report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}], "source": ["if index_read_qc:\n", "    display(Markdown('## Index read QC'))\n", "    display(Markdown('Index reads with average quality score below 30 for a given run may be unreliable and cause demultiplexing errors.'))\n", "    display(Markdown(f'<a href={wkdir}/results/qc/index-read-qc/I1.html>Index 1 FASTQC report</a>'))\n", "    display(Markdown(f'<a href={wkdir}/results/qc/index-read-qc/I2.html>Index 2 FASTQC report</a>'))"]}, {"cell_type": "code", "execution_count": 6, "id": "d633bb0d", "metadata": {"execution": {"iopub.execute_input": "2024-11-07T14:10:03.306806Z", "iopub.status.busy": "2024-11-07T14:10:03.306632Z", "iopub.status.idle": "2024-11-07T14:10:03.751219Z", "shell.execute_reply": "2024-11-07T14:10:03.750488Z"}, "papermill": {"duration": 0.44921, "end_time": "2024-11-07T14:10:03.752228", "exception": false, "start_time": "2024-11-07T14:10:03.303018", "status": "completed"}, "scrolled": false, "tags": ["remove-input"]}, "outputs": [{"data": {"text/markdown": ["## Sample read QC"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_01.html>GH_01 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_02.html>GH_02 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_03.html>GH_03 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_04.html>GH_04 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_05.html>GH_05 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_06.html>GH_06 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_07.html>GH_07 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_08.html>GH_08 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_09.html>GH_09 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_10.html>GH_10 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_11.html>GH_11 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_12.html>GH_12 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_13.html>GH_13 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_14.html>GH_14 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_15.html>GH_15 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_16.html>GH_16 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_17.html>GH_17 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_18.html>GH_18 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_19.html>GH_19 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_20.html>GH_20 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_21.html>GH_21 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_22.html>GH_22 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_23.html>GH_23 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_24.html>GH_24 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_25.html>GH_25 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_26.html>GH_26 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_27.html>GH_27 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_28.html>GH_28 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_29.html>GH_29 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_30.html>GH_30 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_31.html>GH_31 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_32.html>GH_32 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_33.html>GH_33 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_34.html>GH_34 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_35.html>GH_35 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_36.html>GH_36 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_37.html>GH_37 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_38.html>GH_38 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_39.html>GH_39 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_40_low_vol.html>GH_40_low_vol fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_41.html>GH_41 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_42.html>GH_42 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_43.html>GH_43 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_44.html>GH_44 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_45.html>GH_45 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_46.html>GH_46 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_47.html>GH_47 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_48.html>GH_48 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_49.html>GH_49 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_50.html>GH_50 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_51.html>GH_51 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_52.html>GH_52 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_53.html>GH_53 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_54.html>GH_54 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_55.html>GH_55 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_56.html>GH_56 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_57.html>GH_57 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_58.html>GH_58 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_59.html>GH_59 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_60.html>GH_60 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a 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["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_65_low_vol.html>GH_65_low_vol fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_66.html>GH_66 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_67.html>GH_67 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_68.html>GH_68 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_69.html>GH_69 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_70.html>GH_70 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_71.html>GH_71 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_72.html>GH_72 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_73.html>GH_73 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_74.html>GH_74 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_75.html>GH_75 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_76.html>GH_76 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, 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["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_85.html>GH_85 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_86.html>GH_86 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_87.html>GH_87 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_88.html>GH_88 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_89.html>GH_89 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_90.html>GH_90 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_91.html>GH_91 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GH_92.html>GH_92 fastp 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{"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_04.html>GM_04 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_05.html>GM_05 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_06.html>GM_06 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_07.html>GM_07 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_08.html>GM_08 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_09.html>GM_09 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_10.html>GM_10 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_11.html>GM_11 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_12.html>GM_12 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_13.html>GM_13 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_14.html>GM_14 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_15.html>GM_15 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, 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{}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_20.html>GM_20 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_21.html>GM_21 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_22.html>GM_22 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_23.html>GM_23 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, 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["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_32.html>GM_32 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_33.html>GM_33 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_34.html>GM_34 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_35.html>GM_35 fastp report</a>"], 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["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_51.html>GM_51 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_52.html>GM_52 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_53.html>GM_53 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_54.html>GM_54 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_55.html>GM_55 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_56.html>GM_56 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_57.html>GM_57 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_58.html>GM_58 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_59.html>GM_59 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_60.html>GM_60 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_61.html>GM_61 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_62.html>GM_62 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_63.html>GM_63 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_64.html>GM_64 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_65.html>GM_65 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_66.html>GM_66 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_67.html>GM_67 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_68.html>GM_68 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_69.html>GM_69 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_70.html>GM_70 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_71.html>GM_71 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_72.html>GM_72 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_73.html>GM_73 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_74.html>GM_74 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, 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["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_83.html>GM_83 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_84.html>GM_84 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_85.html>GM_85 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_86.html>GM_86 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_87.html>GM_87 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_88.html>GM_88 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_89.html>GM_89 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/GM_90.html>GM_90 fastp 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href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_alive_12.html>VK7_alive_12 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_dead_13.html>VK7_dead_13 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_dead_14.html>VK7_dead_14 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_dead_15.html>VK7_dead_15 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_dead_16.html>VK7_dead_16 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_dead_17.html>VK7_dead_17 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_dead_04_dil.html>VK7_dead_04_dil fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_alive_13.html>VK7_alive_13 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_alive_14.html>VK7_alive_14 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_alive_15.html>VK7_alive_15 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_alive_16.html>VK7_alive_16 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_alive_17.html>VK7_alive_17 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_alive_18.html>VK7_alive_18 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_dead_18.html>VK7_dead_18 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_dead_19.html>VK7_dead_19 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_dead_20.html>VK7_dead_20 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_dead_21.html>VK7_dead_21 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_dead_22.html>VK7_dead_22 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_dead_10_dil.html>VK7_dead_10_dil fastp report</a>"], "text/plain": 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href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_alive_22.html>VK7_alive_22 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_alive_23.html>VK7_alive_23 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_alive_24.html>VK7_alive_24 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_dead_23.html>VK7_dead_23 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_dead_24.html>VK7_dead_24 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_dead_25.html>VK7_dead_25 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_dead_26.html>VK7_dead_26 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_dead_27.html>VK7_dead_27 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_dead_16_dil.html>VK7_dead_16_dil fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_alive_25.html>VK7_alive_25 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_alive_26.html>VK7_alive_26 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_alive_27.html>VK7_alive_27 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_alive_28.html>VK7_alive_28 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_alive_29.html>VK7_alive_29 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_alive_30.html>VK7_alive_30 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_dead_28.html>VK7_dead_28 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_dead_29.html>VK7_dead_29 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_dead_30.html>VK7_dead_30 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_dead_31.html>VK7_dead_31 fastp report</a>"], "text/plain": 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href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_alive_32.html>VK7_alive_32 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_alive_33.html>VK7_alive_33 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_alive_34.html>VK7_alive_34 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_alive_35.html>VK7_alive_35 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, 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["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_dead_40.html>VK7_dead_40 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_dead_41.html>VK7_dead_41 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_dead_42.html>VK7_dead_42 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_dead_34_dil.html>VK7_dead_34_dil fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_alive_43.html>VK7_alive_43 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_alive_44.html>VK7_alive_44 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_alive_45.html>VK7_alive_45 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_alive_46.html>VK7_alive_46 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_alive_47.html>VK7_alive_47 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/VK7_Negative.html>VK7_Negative fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_01.html>Siaya_Delta_Dead_01 fastp 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href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_05.html>Siaya_Delta_Dead_05 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_06.html>Siaya_Delta_Dead_06 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_07.html>Siaya_Delta_Dead_07 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_08.html>Siaya_Delta_Dead_08 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_09.html>Siaya_Delta_Dead_09 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_10.html>Siaya_Delta_Dead_10 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_11.html>Siaya_Delta_Dead_11 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_12.html>Siaya_Delta_Dead_12 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_13.html>Siaya_Delta_Dead_13 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_14.html>Siaya_Delta_Dead_14 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_15.html>Siaya_Delta_Dead_15 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_16.html>Siaya_Delta_Dead_16 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_17.html>Siaya_Delta_Dead_17 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_18.html>Siaya_Delta_Dead_18 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_19.html>Siaya_Delta_Dead_19 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_20.html>Siaya_Delta_Dead_20 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_21.html>Siaya_Delta_Dead_21 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_22.html>Siaya_Delta_Dead_22 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_23.html>Siaya_Delta_Dead_23 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_24.html>Siaya_Delta_Dead_24 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_25.html>Siaya_Delta_Dead_25 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_26.html>Siaya_Delta_Dead_26 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_27.html>Siaya_Delta_Dead_27 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_28.html>Siaya_Delta_Dead_28 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_29.html>Siaya_Delta_Dead_29 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_30.html>Siaya_Delta_Dead_30 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_31.html>Siaya_Delta_Dead_31 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_32.html>Siaya_Delta_Dead_32 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_33.html>Siaya_Delta_Dead_33 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_34.html>Siaya_Delta_Dead_34 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_35.html>Siaya_Delta_Dead_35 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_36.html>Siaya_Delta_Dead_36 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_37.html>Siaya_Delta_Dead_37 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_38.html>Siaya_Delta_Dead_38 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_39.html>Siaya_Delta_Dead_39 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_40.html>Siaya_Delta_Dead_40 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_41.html>Siaya_Delta_Dead_41 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_42.html>Siaya_Delta_Dead_42 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_43.html>Siaya_Delta_Dead_43 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_44.html>Siaya_Delta_Dead_44 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_45.html>Siaya_Delta_Dead_45 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_46.html>Siaya_Delta_Dead_46 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_47.html>Siaya_Delta_Dead_47 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_48.html>Siaya_Delta_Dead_48 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_49.html>Siaya_Delta_Dead_49 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_50.html>Siaya_Delta_Dead_50 fastp report</a>"], "text/plain": 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href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_54.html>Siaya_Delta_Dead_54 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_55.html>Siaya_Delta_Dead_55 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_56.html>Siaya_Delta_Dead_56 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_57.html>Siaya_Delta_Dead_57 fastp report</a>"], "text/plain": 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href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_61.html>Siaya_Delta_Dead_61 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_62.html>Siaya_Delta_Dead_62 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_63.html>Siaya_Delta_Dead_63 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_64.html>Siaya_Delta_Dead_64 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_65.html>Siaya_Delta_Dead_65 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_66.html>Siaya_Delta_Dead_66 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_67.html>Siaya_Delta_Dead_67 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_68.html>Siaya_Delta_Dead_68 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_69.html>Siaya_Delta_Dead_69 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_70.html>Siaya_Delta_Dead_70 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_71.html>Siaya_Delta_Dead_71 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_72.html>Siaya_Delta_Dead_72 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_73.html>Siaya_Delta_Dead_73 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_74.html>Siaya_Delta_Dead_74 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_75.html>Siaya_Delta_Dead_75 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_76.html>Siaya_Delta_Dead_76 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_77.html>Siaya_Delta_Dead_77 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_78.html>Siaya_Delta_Dead_78 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_79.html>Siaya_Delta_Dead_79 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_80.html>Siaya_Delta_Dead_80 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_81.html>Siaya_Delta_Dead_81 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_82.html>Siaya_Delta_Dead_82 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_83.html>Siaya_Delta_Dead_83 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_84.html>Siaya_Delta_Dead_84 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_85.html>Siaya_Delta_Dead_85 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_86.html>Siaya_Delta_Dead_86 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_87.html>Siaya_Delta_Dead_87 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_88.html>Siaya_Delta_Dead_88 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_89.html>Siaya_Delta_Dead_89 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_90.html>Siaya_Delta_Dead_90 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_91.html>Siaya_Delta_Dead_91 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_92.html>Siaya_Delta_Dead_92 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_93.html>Siaya_Delta_Dead_93 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_94.html>Siaya_Delta_Dead_94 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_95.html>Siaya_Delta_Dead_95 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_Negative.html>Siaya_Delta_Dead_Negative fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_01.html>Siaya_Delta_Alive_01 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_02.html>Siaya_Delta_Alive_02 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_03.html>Siaya_Delta_Alive_03 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_04.html>Siaya_Delta_Alive_04 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_05.html>Siaya_Delta_Alive_05 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_06.html>Siaya_Delta_Alive_06 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_07.html>Siaya_Delta_Alive_07 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_08.html>Siaya_Delta_Alive_08 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_09.html>Siaya_Delta_Alive_09 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_10.html>Siaya_Delta_Alive_10 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_11.html>Siaya_Delta_Alive_11 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_12.html>Siaya_Delta_Alive_12 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_13.html>Siaya_Delta_Alive_13 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_14.html>Siaya_Delta_Alive_14 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_15.html>Siaya_Delta_Alive_15 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_16.html>Siaya_Delta_Alive_16 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_17.html>Siaya_Delta_Alive_17 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_18.html>Siaya_Delta_Alive_18 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_19.html>Siaya_Delta_Alive_19 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_20.html>Siaya_Delta_Alive_20 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_21.html>Siaya_Delta_Alive_21 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_22.html>Siaya_Delta_Alive_22 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_23.html>Siaya_Delta_Alive_23 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_24.html>Siaya_Delta_Alive_24 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_25.html>Siaya_Delta_Alive_25 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_26.html>Siaya_Delta_Alive_26 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_27.html>Siaya_Delta_Alive_27 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_28.html>Siaya_Delta_Alive_28 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_29.html>Siaya_Delta_Alive_29 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_30.html>Siaya_Delta_Alive_30 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_31.html>Siaya_Delta_Alive_31 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_32.html>Siaya_Delta_Alive_32 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_33.html>Siaya_Delta_Alive_33 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_34.html>Siaya_Delta_Alive_34 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_35.html>Siaya_Delta_Alive_35 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_36.html>Siaya_Delta_Alive_36 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_37.html>Siaya_Delta_Alive_37 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_38.html>Siaya_Delta_Alive_38 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_39.html>Siaya_Delta_Alive_39 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_40.html>Siaya_Delta_Alive_40 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_41.html>Siaya_Delta_Alive_41 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_42.html>Siaya_Delta_Alive_42 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_43.html>Siaya_Delta_Alive_43 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_44.html>Siaya_Delta_Alive_44 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_45.html>Siaya_Delta_Alive_45 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_46.html>Siaya_Delta_Alive_46 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_47.html>Siaya_Delta_Alive_47 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_48.html>Siaya_Delta_Alive_48 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_49.html>Siaya_Delta_Alive_49 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_50.html>Siaya_Delta_Alive_50 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_51.html>Siaya_Delta_Alive_51 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_52.html>Siaya_Delta_Alive_52 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_53.html>Siaya_Delta_Alive_53 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_54.html>Siaya_Delta_Alive_54 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_55.html>Siaya_Delta_Alive_55 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_56.html>Siaya_Delta_Alive_56 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_57.html>Siaya_Delta_Alive_57 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_58.html>Siaya_Delta_Alive_58 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_59.html>Siaya_Delta_Alive_59 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_60.html>Siaya_Delta_Alive_60 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_61.html>Siaya_Delta_Alive_61 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_62.html>Siaya_Delta_Alive_62 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_63.html>Siaya_Delta_Alive_63 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_64.html>Siaya_Delta_Alive_64 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_65.html>Siaya_Delta_Alive_65 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_66.html>Siaya_Delta_Alive_66 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_67.html>Siaya_Delta_Alive_67 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_68.html>Siaya_Delta_Alive_68 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_69.html>Siaya_Delta_Alive_69 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_70.html>Siaya_Delta_Alive_70 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_71.html>Siaya_Delta_Alive_71 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_72.html>Siaya_Delta_Alive_72 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_73.html>Siaya_Delta_Alive_73 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_74.html>Siaya_Delta_Alive_74 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_75.html>Siaya_Delta_Alive_75 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_76.html>Siaya_Delta_Alive_76 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_77.html>Siaya_Delta_Alive_77 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_78.html>Siaya_Delta_Alive_78 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_79.html>Siaya_Delta_Alive_79 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_80.html>Siaya_Delta_Alive_80 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_81.html>Siaya_Delta_Alive_81 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_82.html>Siaya_Delta_Alive_82 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_83.html>Siaya_Delta_Alive_83 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_84.html>Siaya_Delta_Alive_84 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_85.html>Siaya_Delta_Alive_85 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_86.html>Siaya_Delta_Alive_86 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_87.html>Siaya_Delta_Alive_87 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_88.html>Siaya_Delta_Alive_88 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_89.html>Siaya_Delta_Alive_89 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_90.html>Siaya_Delta_Alive_90 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_91.html>Siaya_Delta_Alive_91 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_92.html>Siaya_Delta_Alive_92 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_93.html>Siaya_Delta_Alive_93 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_94.html>Siaya_Delta_Alive_94 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_95.html>Siaya_Delta_Alive_95 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_Negative.html>Siaya_Delta_Alive_Negative fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_96.html>Siaya_Delta_Dead_96 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_97.html>Siaya_Delta_Dead_97 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_98.html>Siaya_Delta_Dead_98 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_99.html>Siaya_Delta_Dead_99 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_100.html>Siaya_Delta_Dead_100 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_96.html>Siaya_Delta_Alive_96 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_97.html>Siaya_Delta_Alive_97 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_98.html>Siaya_Delta_Alive_98 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_99.html>Siaya_Delta_Alive_99 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_101.html>Siaya_Delta_Dead_101 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_102.html>Siaya_Delta_Dead_102 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_103.html>Siaya_Delta_Dead_103 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_104.html>Siaya_Delta_Dead_104 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_105.html>Siaya_Delta_Dead_105 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_100.html>Siaya_Delta_Alive_100 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_101.html>Siaya_Delta_Alive_101 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_102.html>Siaya_Delta_Alive_102 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_103.html>Siaya_Delta_Alive_103 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_106.html>Siaya_Delta_Dead_106 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_107.html>Siaya_Delta_Dead_107 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_108.html>Siaya_Delta_Dead_108 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_109.html>Siaya_Delta_Dead_109 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_110.html>Siaya_Delta_Dead_110 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_104.html>Siaya_Delta_Alive_104 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_105.html>Siaya_Delta_Alive_105 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_106.html>Siaya_Delta_Alive_106 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_107.html>Siaya_Delta_Alive_107 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_111.html>Siaya_Delta_Dead_111 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_112.html>Siaya_Delta_Dead_112 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_113.html>Siaya_Delta_Dead_113 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_114.html>Siaya_Delta_Dead_114 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_115.html>Siaya_Delta_Dead_115 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_108.html>Siaya_Delta_Alive_108 fastp report</a>"], "text/plain": 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href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_116.html>Siaya_Delta_Dead_116 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_117.html>Siaya_Delta_Dead_117 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_118.html>Siaya_Delta_Dead_118 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Dead_119.html>Siaya_Delta_Dead_119 fastp report</a>"], "text/plain": 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href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_118.html>Siaya_Delta_Alive_118 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_119.html>Siaya_Delta_Alive_119 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_120.html>Siaya_Delta_Alive_120 fastp report</a>"], "text/plain": ["<IPython.core.display.Markdown object>"]}, "metadata": {}, "output_type": "display_data"}, {"data": {"text/markdown": ["<a href=/home/snagi/lstm_projects/ampseq-agvampir002/results/qc/fastp_reports/Siaya_Delta_Alive_121.html>Siaya_Delta_Alive_121 fastp report</a>"], 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