AmpSeeker

Welcome to the AmpSeeker results web-book, built using papermill and Jupyter-book. In this private web-page, users can explore the results from their amplicon sequencing data.

User guide

---

Sequencing and workflow

• Run information
• Run statistics

Quality control

• Read quality
• Plate statistics
• Sample quality control

Results

• Coverage
• Population structure
• NJT
• SNP data
• Genetic diversity
• Plotting allele frequencies

Ag-vampIR

• Species ID
• Kdr origins and diplotype clustering