RNA-Seq-Pop#
Welcome to the RNA-Seq-Pop documentation!
RNA-Seq-Pop is a computational pipeline to analyse Illumina RNA-Sequencing data of any organism. As well as performing standard transcriptomic analyses, such as differential expression, RNA-Seq-Pop also calls and analyses genetic polymorphisms, extracting population genomic signals. This Jupyter Book will help you install and configure the workflow to apply it to your own data.
Sanjay C Nagi, Ambrose Oruni, David Weetman, Martin J Donnelly (2022). RNA-Seq-Pop: Exploiting the sequence in RNA-Seq - a Snakemake workflow reveals patterns of insecticide resistance in the malaria vector Anopheles gambiae. bioRxiv 2022.06.17.493894; doi: https://doi.org/10.1101/2022.06.17.493894
Getting started
The RNA-Seq-Pop workflow
Troubleshooting and contributing